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 * (the "License"); you may not use this file except in compliance with
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package org.apache.commons.math3.optimization.direct;

import java.util.Arrays;
import java.util.Comparator;

import org.apache.commons.math3.analysis.MultivariateFunction;
import org.apache.commons.math3.exception.NotStrictlyPositiveException;
import org.apache.commons.math3.exception.DimensionMismatchException;
import org.apache.commons.math3.exception.ZeroException;
import org.apache.commons.math3.exception.OutOfRangeException;
import org.apache.commons.math3.exception.NullArgumentException;
import org.apache.commons.math3.exception.MathIllegalArgumentException;
import org.apache.commons.math3.exception.util.LocalizedFormats;
import org.apache.commons.math3.optimization.PointValuePair;
import org.apache.commons.math3.optimization.OptimizationData;

This class implements the simplex concept. It is intended to be used in conjunction with SimplexOptimizer. 
 The initial configuration of the simplex is set by the constructors AbstractSimplex(double[]) or AbstractSimplex(double[][]). The other constructor will set all steps to 1, thus building a default configuration from a unit hypercube. 

Users must call the build method in order to create the data structure that will be acted on by the other methods of this class. 
See Also:
SimplexOptimizer
Deprecated:
As of 3.1 (to be removed in 4.0).
Since:
3.0/**
 * This class implements the simplex concept.
 * It is intended to be used in conjunction with {@link SimplexOptimizer}.
 * <br/>
 * The initial configuration of the simplex is set by the constructors
 * {@link #AbstractSimplex(double[])} or {@link #AbstractSimplex(double[][])}.
 * The other {@link #AbstractSimplex(int) constructor} will set all steps
 * to 1, thus building a default configuration from a unit hypercube.
 * <br/>
 * Users <em>must</em> call the {@link #build(double[]) build} method in order
 * to create the data structure that will be acted on by the other methods of
 * this class.
 *
 * @see SimplexOptimizer
 * @deprecated As of 3.1 (to be removed in 4.0).
 * @since 3.0
 */
@Deprecated
public abstract class AbstractSimplex implements OptimizationData {
    
Simplex. /** Simplex. */
    private PointValuePair[] simplex;
    
Start simplex configuration. /** Start simplex configuration. */
    private double[][] startConfiguration;
    
Simplex dimension (must be equal to simplex.length - 1). /** Simplex dimension (must be equal to {@code simplex.length - 1}). */
    private final int dimension;

    
Build a unit hypercube simplex.
Params:
n – Dimension of the simplex./**
     * Build a unit hypercube simplex.
     *
     * @param n Dimension of the simplex.
     */
    protected AbstractSimplex(int n) {
        this(n, 1d);
    }

    
Build a hypercube simplex with the given side length.
Params:
n – Dimension of the simplex.
sideLength – Length of the sides of the hypercube./**
     * Build a hypercube simplex with the given side length.
     *
     * @param n Dimension of the simplex.
     * @param sideLength Length of the sides of the hypercube.
     */
    protected AbstractSimplex(int n,
                              double sideLength) {
        this(createHypercubeSteps(n, sideLength));
    }

    
The start configuration for simplex is built from a box parallel to
the canonical axes of the space. The simplex is the subset of vertices
of a box parallel to the canonical axes. It is built as the path followed
while traveling from one vertex of the box to the diagonally opposite
vertex moving only along the box edges. The first vertex of the box will
be located at the start point of the optimization.
As an example, in dimension 3 a simplex has 4 vertices. Setting the
steps to (1, 10, 2) and the start point to (1, 1, 1) would imply the
start simplex would be: { (1, 1, 1), (2, 1, 1), (2, 11, 1), (2, 11, 3) }.
The first vertex would be set to the start point at (1, 1, 1) and the
last vertex would be set to the diagonally opposite vertex at (2, 11, 3).
Params:
steps – Steps along the canonical axes representing box edges. They
may be negative but not zero.
Throws:
NullArgumentException – if steps is null.
ZeroException – if one of the steps is zero./**
     * The start configuration for simplex is built from a box parallel to
     * the canonical axes of the space. The simplex is the subset of vertices
     * of a box parallel to the canonical axes. It is built as the path followed
     * while traveling from one vertex of the box to the diagonally opposite
     * vertex moving only along the box edges. The first vertex of the box will
     * be located at the start point of the optimization.
     * As an example, in dimension 3 a simplex has 4 vertices. Setting the
     * steps to (1, 10, 2) and the start point to (1, 1, 1) would imply the
     * start simplex would be: { (1, 1, 1), (2, 1, 1), (2, 11, 1), (2, 11, 3) }.
     * The first vertex would be set to the start point at (1, 1, 1) and the
     * last vertex would be set to the diagonally opposite vertex at (2, 11, 3).
     *
     * @param steps Steps along the canonical axes representing box edges. They
     * may be negative but not zero.
     * @throws NullArgumentException if {@code steps} is {@code null}.
     * @throws ZeroException if one of the steps is zero.
     */
    protected AbstractSimplex(final double[] steps) {
        if (steps == null) {
            throw new NullArgumentException();
        }
        if (steps.length == 0) {
            throw new ZeroException();
        }
        dimension = steps.length;

        // Only the relative position of the n final vertices with respect
        // to the first one are stored.
        startConfiguration = new double[dimension][dimension];
        for (int i = 0; i < dimension; i++) {
            final double[] vertexI = startConfiguration[i];
            for (int j = 0; j < i + 1; j++) {
                if (steps[j] == 0) {
                    throw new ZeroException(LocalizedFormats.EQUAL_VERTICES_IN_SIMPLEX);
                }
                System.arraycopy(steps, 0, vertexI, 0, j + 1);
            }
        }
    }

    
The real initial simplex will be set up by moving the reference
simplex such that its first point is located at the start point of the
optimization.
Params:
referenceSimplex – Reference simplex.
Throws:
NotStrictlyPositiveException – if the reference simplex does not
contain at least one point.
DimensionMismatchException – if there is a dimension mismatch
in the reference simplex.
IllegalArgumentException – if one of its vertices is duplicated./**
     * The real initial simplex will be set up by moving the reference
     * simplex such that its first point is located at the start point of the
     * optimization.
     *
     * @param referenceSimplex Reference simplex.
     * @throws NotStrictlyPositiveException if the reference simplex does not
     * contain at least one point.
     * @throws DimensionMismatchException if there is a dimension mismatch
     * in the reference simplex.
     * @throws IllegalArgumentException if one of its vertices is duplicated.
     */
    protected AbstractSimplex(final double[][] referenceSimplex) {
        if (referenceSimplex.length <= 0) {
            throw new NotStrictlyPositiveException(LocalizedFormats.SIMPLEX_NEED_ONE_POINT,
                                                   referenceSimplex.length);
        }
        dimension = referenceSimplex.length - 1;

        // Only the relative position of the n final vertices with respect
        // to the first one are stored.
        startConfiguration = new double[dimension][dimension];
        final double[] ref0 = referenceSimplex[0];

        // Loop over vertices.
        for (int i = 0; i < referenceSimplex.length; i++) {
            final double[] refI = referenceSimplex[i];

            // Safety checks.
            if (refI.length != dimension) {
                throw new DimensionMismatchException(refI.length, dimension);
            }
            for (int j = 0; j < i; j++) {
                final double[] refJ = referenceSimplex[j];
                boolean allEquals = true;
                for (int k = 0; k < dimension; k++) {
                    if (refI[k] != refJ[k]) {
                        allEquals = false;
                        break;
                    }
                }
                if (allEquals) {
                    throw new MathIllegalArgumentException(LocalizedFormats.EQUAL_VERTICES_IN_SIMPLEX,
                                                           i, j);
                }
            }

            // Store vertex i position relative to vertex 0 position.
            if (i > 0) {
                final double[] confI = startConfiguration[i - 1];
                for (int k = 0; k < dimension; k++) {
                    confI[k] = refI[k] - ref0[k];
                }
            }
        }
    }

    
Get simplex dimension.
Returns:
the dimension of the simplex./**
     * Get simplex dimension.
     *
     * @return the dimension of the simplex.
     */
    public int getDimension() {
        return dimension;
    }

    
Get simplex size. After calling the build method, this method will will be equivalent to getDimension() + 1. 
Returns:
the size of the simplex./**
     * Get simplex size.
     * After calling the {@link #build(double[]) build} method, this method will
     * will be equivalent to {@code getDimension() + 1}.
     *
     * @return the size of the simplex.
     */
    public int getSize() {
        return simplex.length;
    }

    
Compute the next simplex of the algorithm.
Params:
evaluationFunction – Evaluation function.
comparator – Comparator to use to sort simplex vertices from best
to worst.
Throws:
TooManyEvaluationsException – 
if the algorithm fails to converge./**
     * Compute the next simplex of the algorithm.
     *
     * @param evaluationFunction Evaluation function.
     * @param comparator Comparator to use to sort simplex vertices from best
     * to worst.
     * @throws org.apache.commons.math3.exception.TooManyEvaluationsException
     * if the algorithm fails to converge.
     */
    public abstract void iterate(final MultivariateFunction evaluationFunction,
                                 final Comparator<PointValuePair> comparator);

    
Build an initial simplex.
Params:
startPoint – First point of the simplex.
Throws:
DimensionMismatchException – if the start point does not match
simplex dimension./**
     * Build an initial simplex.
     *
     * @param startPoint First point of the simplex.
     * @throws DimensionMismatchException if the start point does not match
     * simplex dimension.
     */
    public void build(final double[] startPoint) {
        if (dimension != startPoint.length) {
            throw new DimensionMismatchException(dimension, startPoint.length);
        }

        // Set first vertex.
        simplex = new PointValuePair[dimension + 1];
        simplex[0] = new PointValuePair(startPoint, Double.NaN);

        // Set remaining vertices.
        for (int i = 0; i < dimension; i++) {
            final double[] confI = startConfiguration[i];
            final double[] vertexI = new double[dimension];
            for (int k = 0; k < dimension; k++) {
                vertexI[k] = startPoint[k] + confI[k];
            }
            simplex[i + 1] = new PointValuePair(vertexI, Double.NaN);
        }
    }

    
Evaluate all the non-evaluated points of the simplex.
Params:
evaluationFunction – Evaluation function.
comparator – Comparator to use to sort simplex vertices from best to worst.
Throws:
TooManyEvaluationsException – 
if the maximal number of evaluations is exceeded./**
     * Evaluate all the non-evaluated points of the simplex.
     *
     * @param evaluationFunction Evaluation function.
     * @param comparator Comparator to use to sort simplex vertices from best to worst.
     * @throws org.apache.commons.math3.exception.TooManyEvaluationsException
     * if the maximal number of evaluations is exceeded.
     */
    public void evaluate(final MultivariateFunction evaluationFunction,
                         final Comparator<PointValuePair> comparator) {
        // Evaluate the objective function at all non-evaluated simplex points.
        for (int i = 0; i < simplex.length; i++) {
            final PointValuePair vertex = simplex[i];
            final double[] point = vertex.getPointRef();
            if (Double.isNaN(vertex.getValue())) {
                simplex[i] = new PointValuePair(point, evaluationFunction.value(point), false);
            }
        }

        // Sort the simplex from best to worst.
        Arrays.sort(simplex, comparator);
    }

    
Replace the worst point of the simplex by a new point.
Params:
pointValuePair – Point to insert.
comparator – Comparator to use for sorting the simplex vertices
from best to worst./**
     * Replace the worst point of the simplex by a new point.
     *
     * @param pointValuePair Point to insert.
     * @param comparator Comparator to use for sorting the simplex vertices
     * from best to worst.
     */
    protected void replaceWorstPoint(PointValuePair pointValuePair,
                                     final Comparator<PointValuePair> comparator) {
        for (int i = 0; i < dimension; i++) {
            if (comparator.compare(simplex[i], pointValuePair) > 0) {
                PointValuePair tmp = simplex[i];
                simplex[i] = pointValuePair;
                pointValuePair = tmp;
            }
        }
        simplex[dimension] = pointValuePair;
    }

    
Get the points of the simplex.
Returns:
all the simplex points./**
     * Get the points of the simplex.
     *
     * @return all the simplex points.
     */
    public PointValuePair[] getPoints() {
        final PointValuePair[] copy = new PointValuePair[simplex.length];
        System.arraycopy(simplex, 0, copy, 0, simplex.length);
        return copy;
    }

    
Get the simplex point stored at the requested index. 
Params:
index – Location.
Returns:
the point at location index./**
     * Get the simplex point stored at the requested {@code index}.
     *
     * @param index Location.
     * @return the point at location {@code index}.
     */
    public PointValuePair getPoint(int index) {
        if (index < 0 ||
            index >= simplex.length) {
            throw new OutOfRangeException(index, 0, simplex.length - 1);
        }
        return simplex[index];
    }

    
Store a new point at location index. Note that no deep-copy of point is performed. 
Params:
index – Location.
point – New value./**
     * Store a new point at location {@code index}.
     * Note that no deep-copy of {@code point} is performed.
     *
     * @param index Location.
     * @param point New value.
     */
    protected void setPoint(int index, PointValuePair point) {
        if (index < 0 ||
            index >= simplex.length) {
            throw new OutOfRangeException(index, 0, simplex.length - 1);
        }
        simplex[index] = point;
    }

    
Replace all points. Note that no deep-copy of points is performed. 
Params:
points – New Points./**
     * Replace all points.
     * Note that no deep-copy of {@code points} is performed.
     *
     * @param points New Points.
     */
    protected void setPoints(PointValuePair[] points) {
        if (points.length != simplex.length) {
            throw new DimensionMismatchException(points.length, simplex.length);
        }
        simplex = points;
    }

    
Create steps for a unit hypercube.
Params:
n – Dimension of the hypercube.
sideLength – Length of the sides of the hypercube.
Returns:
the steps./**
     * Create steps for a unit hypercube.
     *
     * @param n Dimension of the hypercube.
     * @param sideLength Length of the sides of the hypercube.
     * @return the steps.
     */
    private static double[] createHypercubeSteps(int n,
                                                 double sideLength) {
        final double[] steps = new double[n];
        for (int i = 0; i < n; i++) {
            steps[i] = sideLength;
        }
        return steps;
    }
}